With recent advances in molecular biology and a growing biomass availability for use as industrial feedstock, the bio-based economy is getting a wider range of inputs. Scaling up the bio(techno)logy innovations and implementation in large-scale factories or biorefineries clearly is a present bottleneck: industries are struggling to get the bio-opportunities to the market, as experienced industrial bioprocess designers and operational experts are not readily available to meet the growing needs.
Teachers from universities and companies have joint forces and will present a program that centers around industrial fermentation processes, and is flanked by overviews on upstream and downstream processing. The focus of the course is on design of innovative microbial fermentations, for bio-products such as amino acids and monomers for bio-plastics, complemented with examples of marine and mammalian processes, for micro-algae products and bio-pharmaceuticals. A substantial part (ca. 40% of the time) will be dedicated to a case study, executed in teams of 4-6 participants, on the design of a bioprocess for the production of a chemical (1,4-butanediol). Basic theory on thermodynamic, microbial stoichiometry and kinetics, transport phenomena and scale up/down will be extensively applied and integrated. The team with the best design performance wins the Genomatica Bioprocess Design prize. There are several guest lecturers from leading universities and industries in the bioprocess field, providing latest insights in technology innovations, non-conventional feedstocks and new bio-product categories, complemented with views from the industrial practice.
The Advanced Course Bioprocess Design is cooperatively organised by BioTech Delft and graduate school VLAG.
Online or on-site participation
It will be possible to attend this course online as well as on-site. Online would mean you follow the course real-time, but from a computer. It will also be possible to attend the social events online, to interact with the participants and speakers. Expect for the course dinner. Up until 4 weeks in advance of the course you can change your way of participating. Feel free to contact us at firstname.lastname@example.org if you have any questions.
Advanced Course Bioprocess Design
This one-week course is intensive and has long days. To ensure active participation by those attending, a combination of theoretical (lectures) and practical (exercises, case study) work is offered. The course will be given in English. A pocket calculator is required.
The core lectures are mainly scheduled in the mornings and will focus on the following themes:
- Rates, thermodynamics and metabolism of micro organisms
- Transport processes in bioreactors
- Fermentation processes and their scale up features
In the early evenings, invited lectures are scheduled on e.g. examples of successful bioprocesses, downstream processing, novel feedstocks and economic aspects of bioprocessing.
Exercises and case study
For a better understanding of the lectures, the theory is applied in exercises on the Monday and Tuesday afternoons. From Wednesday on, the practical work continues in a case study on a real-life bioprocess design question where all theory will be needed.
The course (including preparatory materials) is valued 48 hours of work.
Who should attend?
The course is primarily aimed at academic and industrial specialists (MSc, PhD or equivalent experience) that seek for refreshing and broadening their knowhow and practical insight in Bioprocess Design, to assist in progress towards the bio-based economy. A background in e.g. biochemical engineering, microbiology or biochemistry and a basic working knowledge of the other disciplines is expected.
Please register clicking the tab Register to attend the course. Applicants will be handled in order of the date of receipt.
Programme for 2021:
|Monday, 4 October 2021
Theme: Processes: DSP, pre-treatment
Micro-organisms: Rates and process reaction
|09.15||Introduction and outline course||Henk Noorman|
|09.30||Downstream Processing||Michel Eppink|
|11.00||The process reaction for bioprocess design: a thermodynamic approach||Sef Heijnen|
|13.30||Exercise: obtaining the process reaction|
|17.30||Advances in Lignocellulose Conversion||Mirjam Kabel|
|19.00||Social drink and buffet|
|Tuesday, 5 October 2021
Theme: Fermentors: design of transport
|09.00||Gas transport||Henk Noorman|
|09.45||Heat transport||Henk Noorman|
|11.30||Algal processes||Rene Wijffels|
|12.15||Lunch and Group picture|
|13.15||Calculations of fermentor in- and outflows and broth mass using the process reaction||Sef Heijnen|
|13.45||Exercise: Calculation of fermentor in- and outflows and broth mass using the process reaction|
|17.15||Zero concepts in Bioprocessing||Henk Noorman|
|18.30||End of day|
|Wednesday, 6 October 2021
Themes: Scale-up of fermentation processes, case study
|09.00||Industrial microbial fermentation||Henk Noorman|
|09.45||Animal cell cultivation for production of biopharmaceuticals||Dirk Martens|
|10.45||Introduction to the case study||Amit Deshmukh and Henk Noorman|
|11.15||Metabolic design: example and exercises I||Ruud Weusthuis|
|13.10||BPF Tour||Henk Noorman|
|14.15||Metabolic design: example and exercises II||Ruud Weusthuis|
|16.10||Case study part 1: Calculation of the process reaction stoichiometry|
|17.30||Scale-up/scale-down approach||Henk Noorman|
|18.30||End of day|
|Thursday, 7 October 2021
Theme: Case study
|09.00||Case study part 2: Quantification of in- and outputs (rates, composition) and fermentor broth mass|
|10.45||Multilevel engineering of microbial ethyl acetate production||Ruud Weusthuis|
|13.30||C1 feedstocks fermentation||Liang Wu|
|14.45||Case study part 3: Vessel geometry and quantification of transport processes inside the fermentor|
|Friday, 8 October 2021
Theme: Case study
|09.00||Scale-up/scale-down: characteristic times and gradients||Sef Heijnen|
|09.45||Case study part 4: Full scale conditions and scale-up/scale-down|
|11.45||Monascus ruber as cell factory for lactic acid production at low pH||Ruud Weusthuis|
|13:45||Case study: final presentations by the design teams. Genomatica design prize|
Lessons from the industry: developing scalable bioprocesses
The course will be held at:
Biotech Campus Delft (DSM)
Alexander Fleminglaan 1
2613 AX Delft, the Netherlands
Contact course organisation:
Deadline for registration is 13 September 2021
The course fee is:
*To be eligible for the reduced early bird fee you need to register before 26 July 2021. If this date is exceeded, the regular fee applies.
**A limited number of fellowships is available for PhD students. To apply, please include a copy of your registration as a PhD student from your university.
The fee includes course materials, lunches and the buffets and the course dinners as indicated on the program. The fee does not cover other meals or lodging. Hotel accommodation can be arranged at your request.
The course fee is preferably paid by bank transfer. Payment by PayPal is possible. TU Delft employees can use their internal (project) code.
Preparatory texts will be sent one month before start of the course and after receipt of the course fee. The complete set of course books will be supplied at the start of the course.
In the event of your cancellation before 9 August 2021, a full refund will be granted. After this date, a 25% fee charge can be made.
Delay of payment past the final deadline as indicated on the invoice may result in cancellation of entry to the course. Re-entry is only possible in case of vacancies and the regular fee will be applied. Payment terms and deadlines will be indicated on the invoice and/or provided in an e-mail after registration, but the course fee should always be paid before the start of the course.
When the number of participants is too low to have a fruitful course, the Institute BioTech Delft will cancel the event no later than six weeks before the start of the course. The course fee will be reimbursed within three weeks after cancellation. In case a speaker will not be able to present his/her lecture, due to unforeseen circumstances, BioTech Delft will arrange an equivalent replacement.
Henk Noorman was trained as Chemical Engineer from Groningen University (NL). He obtained a PhD in Bioprocess Technology from Delft University of Technology (NL, 1991), on microbal systems modeling. He became a post-doc fellow in a Nordic research consortium, and co-ordinated a fermentation scale-up project among academic groups in Sweden, Denmark and Norway. He then joined Gist-brocades and DSM in Delft (NL) and worked on fermentation development and implementation projects, mainly in the area of antibiotics and bio-based products. He also has been project manager for innovation projects, and received the DSM R&D Award 2010. Henk Noorman is currently working as Senior Science Fellow Bioprocess Technology in the DSM Biotechnology Center and involved in numerous projects in Industrial Biotechnology, Food Specialties, Anti-Infectives, and the Corporate Research Program. In addition he is honorary professor at Technical University Delft working on Bioprocess Design and Integration. Teaching activities include courses in Delft, Wageningen (NL), Brac (Croatia) and Shanghai (China).
Prof. Sef Heijnen
After his MSc studies in Chemical Engineering, Sef Heijnen worked at DSM (then: Gist Brocades) for 15 years and in this period he also completed his PhD thesis in bioprocess technology at Delft University of Technology. In 1988, he became full professor and group leader in Cell Systems Engineering within the Department of Biotechnology of Delft University of Technology. He has an impressive track record: he is (co-) author of over 400 scientific publications, has supervised nearly 60 PhD students and is a member of the Royal Netherlands Academy of Arts and Sciences (KNAW). He is recipient of several science and education awards. His research interests are (1) metabolic engineering and systems biology applied to industrial microbial processes using Saccharomyces cerevisiae, Penicillium chrysogenum and Escherichia coli, (2) metabolome measurement and 13C-tracer analysis in steady state and dynamic conditions, and (3) thermodynamic and kinetic modelling of metabolism, fermentation design and scale-up and scale down of industrial processes. Prof. Heijnen teaches a wide variety of courses, and was elected at TU Delft’s 2003 ‘Leermeester’ (best lecturer).
Prof. Ruud Weusthuis
After studying Biology in Groningen (1984-1989) R. A. Weusthuis obtained his PhD in Microbial Biotechnology at the Delft University of Technology (1989-1994). He joined Wageningen University and Research and headed the Bioconversion group (2004-2008). In 2007 he started working at the Wageningen University, and is active as Associate Professor Microbial Biotechnology. He focuses on the design of breakthrough technologies for the production of chemicals by microorganisms, integrating reactor and cell engineering.
Jason obtained his BS in Chemical Engineering at Northeastern University in Boston, Massachusetts, graduating with highest honors in 2010. He has 7 years of industrial experience, the last 6 years with Genomatica where he is a Sr. Scale-up Engineer. Jason’s core expertise is in fermentation process development and scale-up. Most recently, he was the R&D leader for all process scale-up and technology transfer of Genomatica’s 1,4-butanediol (BDO) process to a licensee plant in Bottrighe, Italy. This plant, owned and operated by Novamont, successfully started up in late 2016. It represents the first example of large-scale fermentation production of an established bulk petrochemical. Jason is also a 2015 graduate of the Advanced Course Bioprocess Design. Using learnings from the course, he collaborated with professors at TU Delft to develop a ‘black-box’ fermentation model of Genomatica’s 1,4-BDO process in large-scale fermentors. The model was used to design scale-down experiments to assess organism and process performance ahead of scale-up, and it demonstrated excellent predictability of fermentation performance at scale.
Dr. Amit T. Deshmukh
Amit studied Chemical Engineering from 1996 to 2000 at the University of Pune, India. In 2005, he traveled to Germany to pursue MSc. in Chemical Engineering with specialization in Bio-chemical engineering at Technische Universität Dortmund. From 2008-2012, he did his PhD in the group of Prof. J.J. (Sef) Heijnen at the Delft University of Technology, Delft. During his PhD, he worked on elucidating in-vivo enzyme kinetics in P.chrysogenum. For last four years, he working as a lead scientist at DSM Biotechnology Center, Delft, carrying out R&D activities for industrial scale fermentation. His work involves scale up/down of fermentation processes, specifically for production of penicillin and cephalosporin antibiotics. He is also part of teaching activities that include courses in Delft (NL) and Shanghai (China).”
Prof. Michel Eppink
Synthon Biopharmaceuticals BV, Nijmegen and Bioprocess Engineering & Wageningen University, Wageningen, the Netherlands
Genomatica Inc., San Diego, CA, USA
Dr. Dirk Martens
Bioprocess Engineering, Wageningen University, Wageningen, the Netherlands
Prof. René Wijffels
Bioprocess Engineering, Wageningen University, Wageningen, the Netherlands
Dr. Liang Wu
DSM Biotechnology Centre, Delft, the Netherlands
Register for the course: Bioprocess Design
Winners of the Genomatica Bioprocess Design Prize
During the course you will work in a team to design a bioprocess. At the end of the week, the team with the best design performance wins. We proudly present the winners of the last years below:
Milica Randelovic, Abhilash Konda, Thanos Pappas, Hirono Suzuki and Nikolaus Vollmer (not on picture)
Christian Sudfeld, Connor Galleher, Willi Gottstein, Hamad Al-Mansour and Javier Pavez
Elco Backus, Stephen Fullmer, Noelia Gudino, Esther Volz, Ana Parruca da Cruz and Zulhaj Rizki